BioPerl Tutorial: Reading multiple GenBank Records with Bio::DB BioPerl Module

bioperl tutorial

In the last BioPerl Tutorial we saw how to retrieve single GenBank Sequence using Bio::DB::GenBnak module. In this one, we will analyze how to do it for multiple GenBank Sequences. NOTE: To install BioPerl, learning how to code in BioPerl or using BioPerl modules, see BioPerl Tutorial series index.  Creating query: NOTE: Executing queries need […]

BioPerl Turtorial Series Index

bioperl tutorial

Hello All, Welcome to my BioPerl Tutorial Series Index. Here you can see list of all articles which I have posted on BioPerl Introduction, install BioPerl on Windows and using BioPerl modules. This is my sincere attempt to help students who want to code learn BioPerl and code in it but due to lack of […]

BioPerl Tutorial: Reading sequence from FASTA file with BioPerl SeqIO (Bio::SeqIO) module

bioperl tutorial

In last article of this BioPerl Tutorial series, I showed how to write sequence information into FASTA file. In this article, we will see how to read sequence from FASTA files using Bio::SeqIO module.   NOTE: To install BioPerl or for knowing about coding in BioPerl, BioPerl modules see index of this BioPerl Tutorial series. […]

BioPerl Tutorial: Retrieving Sequece from BioPerl (Bio::DB) GenBank Module

bioperl tutorial

Continuing with BioPerl Tutorial series, we will see how to access sequences remotely with help of Bio::DB BioPerl module. NOTE: To install BioPerl or for knowing about coding in BioPerl, BioPerl modules see index of this BioPerl Tutorial series. About Bio::DB Bio::DB BioPerl module allows you to fetch biological sequences from local as remote databases. […]

BioPerl Tutorial: Writing sequence to FASTA file with BioPerl SeqIO (Bio::SeqIO) module

bioperl tutorial

Continuing my BioPerl Tutorial series, in this article we will see how to use BioPerl modules, especially SeqIO module. If you are looking for BioPerl Introduction and Usage, click here; to install BioPerl on Windows you can see this BioPerl tutorial and to write your first BioPerl script, click here. Bio::SeqIO is most widely used […]

BioPerl Tutorial: Writing first BioPerl Script (Bio::Seq module)

bioperl tutorial

In this article of my BioPerl Tutorial series, we will see how to write BioPerl Program or BioPerl Script. If you are looking for BioPerl Introduction and Usage, click here and to install BioPerl you can see this BioPerl tutorial for windows installation. NOTE: For this, I assume that you know how to write Perl programs and […]

BioPerl Tutorial: Introduction to BioPerl

bioperl tutorial

Introduction to BioPerl is first article in BioPerl Tutorial series. Know importance and usefulness of BioPerl in Bioinformatics.